C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338154 PHF8-003 ENSG00000172943 9606 - X:53936676-54044174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338154
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338154 1.958±0.00 2.994±0.00 0.655±0.00 0.997±0.00 1.008±0.92 2.205±0.00 5.419±0.00 1.575±0.99 0.387±0.00 3.601±1.05 1.659±0.12 11.147±2.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003682 IDA chromatin binding
GO:0005506 IDA iron ion binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0007420 ISS brain development
GO:0008270 IEA:IDA zinc ion binding
GO:0015630 IDA microtubule cytoskeleton
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032452 IDA histone demethylase activity
GO:0032454 IDA histone demethylase activity (H3-K9 specific)
GO:0033169 IDA histone H3-K9 demethylation
GO:0035064 IDA methylated histone binding
GO:0035574 IDA histone H4-K20 demethylation
GO:0035575 IDA histone demethylase activity (H4-K20 specific)
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045943 IDA positive regulation of transcription from RNA polymerase I promoter
GO:0051864 IDA histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0061188 IDA negative regulation of chromatin silencing at rDNA
GO:0070544 IDA histone H3-K36 demethylation
GO:0071557 IDA histone H3-K27 demethylation
GO:0071558 IDA histone demethylase activity (H3-K27 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168501 Phf8-202 protein_coding Mus_musculus 0 4255
ENSMUST00000046950 Phf8-001 protein_coding Mus_musculus 0 4255
ENSMUST00000112670 Phf8-003 protein_coding Mus_musculus 0 3256
ENSMUST00000112668 Phf8-005 protein_coding Mus_musculus 0 2316
ENSMUST00000112666 Phf8-002 protein_coding Mus_musculus 0 1720
ENSMUST00000112662 Phf8-201 protein_coding Mus_musculus 0 1718
ENSMUST00000046962 Phf8-004 protein_coding Mus_musculus 0 1718
ENSMUST00000024121 4921501E09Rik-201 protein_coding Mus_musculus 0 1604
ENSMUST00000138318 Phf8-006 retained_intron Mus_musculus 0 702
ENSDART00000026314 phf8-001 protein_coding Danio_rerio 0 610
ENSDART00000157355 phf8-201 protein_coding Danio_rerio 0 595
ENSMUST00000148622 Phf8-007 protein_coding Mus_musculus 0 579
ENSMUST00000141715 Phf8-008 retained_intron Mus_musculus 0 305
ENSMUST00000151941 Phf8-009 protein_coding Mus_musculus 0 263

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