C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024620 Chd1-201 ENSMUSG00000023852 10090 + 17:17374332-17394898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024620
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024620 4.193±1.03 3.012±0.78 8.915±2.88 9.262±5.20 3.321±1.00 1.574±0.45 3.712±0.85 2.986±1.01 4.466±2.03 2.742±0.19 2.937±0.95 6.010±2.92 7.700±3.35 1.651±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283109 RIOK2-001 protein_coding Homo_sapiens 0 1496
ENST00000508447 RIOK2-007 protein_coding Homo_sapiens 0 1249
ENST00000508991 RIOK2-004 retained_intron Homo_sapiens 0 558
ENST00000511293 RIOK2-006 protein_coding Homo_sapiens 0 255
ENST00000511920 RIOK2-002 retained_intron Homo_sapiens 0 222

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