C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023852 Chd1 10090 + 17:15704967-17394898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024620 Chd1-201 17374332-17394898 protein_coding
  ENSMUST00000024627 Chd1-001 15704967-15772610 protein_coding
  ENSMUST00000173040 Chd1-006 15756765-15761335 nonsense_mediated_decay
  ENSMUST00000173159 Chd1-004 15705018-15731908 processed_transcript
  ENSMUST00000173311 Chd1-003 15704974-15752992 protein_coding
  ENSMUST00000174461 Chd1-002 15738535-15755348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024620ENSMUST00000024627ENSMUST00000173159ENSMUST00000174461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024620 4.193±1.03 3.012±0.78 8.915±2.88 9.262±5.20 3.321±1.00 1.574±0.45 3.712±0.85 2.986±1.01 4.466±2.03 2.742±0.19 2.937±0.95 6.010±2.92 7.700±3.35 1.651±0.69
ENSMUST00000024627 1.628±0.60 1.614±0.12 2.840±0.43 3.180±1.49 1.759±0.21 1.812±0.63 0.941±0.22 1.681±0.34 2.459±1.30 2.451±0.66 1.517±0.23 3.425±2.12 6.837±1.92 1.634±0.07
ENSMUST00000173159 1.905±0.00 18.635±3.95 N/A N/A 11.612±2.09 5.741±1.60 N/A 1.604±0.00 1.558±0.58 2.710±0.29 N/A 8.594±3.61 N/A N/A
ENSMUST00000174461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.980±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 NAS chromatin binding
GO:0004386 NAS helicase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 NAS nucleus
GO:0005737 IEA cytoplasm
GO:0006333 NAS chromatin assembly or disassembly
GO:0006338 IGI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process
GO:0035064 IEA methylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014878 CHD1 chromodomain helicase DNA binding protein 1 protein_coding Danio_rerio
ENSG00000153922 CHD1 chromodomain helicase DNA binding protein 1 protein_coding Homo_sapiens

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