C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025137 Thoc1-201 ENSMUSG00000024287 10090 + 18:9958180-9995484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025137 2.576±0.73 2.263±0.16 8.269±1.62 7.416±4.56 1.495±0.28 1.560±0.16 1.566±0.07 1.848±0.42 5.778±4.55 2.205±0.64 1.880±0.23 3.320±2.38 8.753±2.26 5.184±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015D CIL_00015D_0002 CGP 18:9958180-10045119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 ISS regulation of DNA recombination
GO:0000346 IEA transcription export complex
GO:0000347 IEA THO complex
GO:0000445 IEA THO complex part of transcription export complex
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006406 ISS mRNA export from nucleus
GO:0006915 RCA apoptotic process
GO:0007165 IEA signal transduction
GO:0008380 IEA RNA splicing
GO:0031297 ISS replication fork processing
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0032786 ISS positive regulation of DNA-templated transcription, elongation
GO:0042981 RCA regulation of apoptotic process
GO:0045171 IEA intercellular bridge
GO:0046784 IEA viral mRNA export from host cell nucleus
GO:0048297 IMP negative regulation of isotype switching to IgA isotypes
GO:2000002 ISS negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261600 THOC1-001 protein_coding Homo_sapiens 0 2774
ENST00000261601 USP14-003 protein_coding Homo_sapiens 3e-39 169
ENST00000577429 THOC1-018 retained_intron Homo_sapiens 0 630
ENST00000577552 THOC1-019 retained_intron Homo_sapiens 0 628
ENST00000578224 THOC1-008 retained_intron Homo_sapiens 0 350
ENST00000578529 THOC1-012 retained_intron Homo_sapiens 0 2425
ENST00000579232 THOC1-010 retained_intron Homo_sapiens 0 1535
ENST00000579891 THOC1-020 protein_coding Homo_sapiens 0 941
ENST00000580038 THOC1-013 nonsense_mediated_decay Homo_sapiens 0 1790
ENST00000581116 THOC1-006 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000581269 THOC1-005 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000582313 THOC1-016 processed_transcript Homo_sapiens 0 1269
ENST00000583228 THOC1-007 retained_intron Homo_sapiens 0 1234
ENST00000584470 THOC1-011 retained_intron Homo_sapiens 0 1232
ENST00000584642 THOC1-014 protein_coding Homo_sapiens 0 401
ENST00000616322 THOC1-201 protein_coding Homo_sapiens 0 2761
ENST00000621904 THOC1-202 protein_coding Homo_sapiens 0 1463

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