C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prefoldin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025204 Pfdn1-201 ENSMUSG00000024346 10090 - 18:36403679-36454495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025204 19.537±1.33 49.451±1.09 24.379±5.07 22.552±17.86 20.034±7.78 30.297±3.58 15.843±2.94 31.622±6.84 23.133±7.38 19.898±1.15 51.242±3.78 35.707±8.42 64.651±33.71 31.553±4.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZM CIL_0006ZM_0002 CGP 18:36345619-36454495
CIL_00062T CIL_00062T_0003 CGP 18:36403679-36515805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0021537 IMP telencephalon development
GO:0021549 IMP cerebellum development
GO:0030036 IMP actin cytoskeleton organization
GO:0042113 IMP B cell activation
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261813 PFDN1-001 protein_coding Homo_sapiens 0 525
ENST00000507185 PFDN1-004 retained_intron Homo_sapiens 0 405
ENST00000510217 PFDN1-003 protein_coding Homo_sapiens 0 239
ENST00000512707 PFDN1-005 retained_intron Homo_sapiens 0 231
ENST00000512925 PFDN1-006 processed_transcript Homo_sapiens 0 235
ENST00000514611 PFDN1-002 processed_transcript Homo_sapiens 0 244
ENST00000524074 PFDN1-007 protein_coding Homo_sapiens 0 405

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