C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repair cross-complementing rodent repair deficiency, complementation group 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025241 Ercc3-001 ENSMUSG00000024382 10090 + 18:32240300-32270151 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025241 14.041±2.19 8.551±1.35 12.476±1.93 10.645±2.63 9.957±1.71 13.389±0.83 5.478±0.61 10.700±1.17 7.120±1.37 13.376±0.72 3.982±0.48 15.823±1.46 15.590±3.32 14.919±0.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0000717 IEA nucleotide-excision repair, DNA duplex unwinding
GO:0001666 IEA response to hypoxia
GO:0003677 IEA DNA binding
GO:0004672 ISS protein kinase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005675 ISS holo TFIIH complex
GO:0006200 IEA ATP catabolic process
GO:0006265 ISS DNA topological change
GO:0006281 IEA DNA repair
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0006915 ISS apoptotic process
GO:0006979 IEA response to oxidative stress
GO:0008022 IEA protein C-terminus binding
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008104 IEA protein localization
GO:0008134 IEA transcription factor binding
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity
GO:0009411 IEA response to UV
GO:0009650 IGI UV protection
GO:0016887 IEA ATPase activity
GO:0032564 IEA dATP binding
GO:0033683 IEA nucleotide-excision repair, DNA incision
GO:0035315 IEA hair cell differentiation
GO:0042277 IEA peptide binding
GO:0043065 IEA positive regulation of apoptotic process
GO:0043138 ISS 3'-5' DNA helicase activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IEA protein N-terminus binding
GO:1901990 IEA regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124565 ercc3-201 protein_coding Danio_rerio 0 1498
ENSDART00000013066 ercc3-001 protein_coding Danio_rerio 0 1498
ENST00000285398 ERCC3-001 protein_coding Homo_sapiens 0 2691
ENST00000426778 ERCC3-005 nonsense_mediated_decay Homo_sapiens 0 2651
ENST00000445889 ERCC3-004 nonsense_mediated_decay Homo_sapiens 0 2652
ENST00000494464 ERCC3-003 retained_intron Homo_sapiens 0 734

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