C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025778 Gldc-201 ENSMUSG00000024827 10090 - 19:30098449-30175418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025778
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025778 0.306±0.07 0.443±0.06 16.701±0.02 5.284±1.47 0.614±0.11 0.111±0.04 0.081±0.03 32.361±4.68 40.898±20.29 0.085±0.03 0.018±0.01 0.361±0.15 7.754±7.77 1.251±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D8 CIL_0001D8_0002 CGP 19:30030513-30175418

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004375 ISO glycine dehydrogenase (decarboxylating) activity
GO:0005739 IDA mitochondrion
GO:0006546 IEA glycine catabolic process
GO:0016829 IEA lyase activity
GO:0030170 IEA pyridoxal phosphate binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000050847 GLDC-201 protein_coding Danio_rerio 3e-33 148
ENST00000321612 GLDC-001 protein_coding Homo_sapiens 0 3430
ENST00000463305 GLDC-002 processed_transcript Homo_sapiens 0 558
ENST00000467946 GLDC-004 processed_transcript Homo_sapiens 0 211
ENST00000477960 GLDC-003 processed_transcript Homo_sapiens 0 357
ENST00000510885 GLDCP1-001 transcribed_processed_pseudogene Homo_sapiens 0 2752

Loading