C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphofurin acidic cluster sorting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025786 Pacs1-201 ENSMUSG00000024855 10090 - 19:5133688-5273119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025786 8.227±2.80 16.617±0.95 6.867±0.26 20.802±8.63 14.686±6.10 5.352±0.92 6.789±0.55 4.686±1.08 3.910±3.70 13.737±2.80 2.113±0.39 21.627±5.38 9.053±3.21 53.561±24.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MM CIL_0001MM_0002 CGP 19:5107746-5273119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IDA protein targeting to Golgi
GO:0005515 IEA protein binding
GO:0030137 IDA COPI-coated vesicle
GO:0044325 IEA ion channel binding
GO:0072661 IEA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320580 PACS1-001 protein_coding Homo_sapiens 0 3836
ENST00000524784 PACS1-006 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000524815 PACS1-013 protein_coding Homo_sapiens 0 702
ENST00000525798 PACS1-012 retained_intron Homo_sapiens 0 407
ENST00000527224 PACS1-003 retained_intron Homo_sapiens 0 1230
ENST00000527380 PACS1-016 protein_coding Homo_sapiens 0 568
ENST00000529677 PACS1-015 protein_coding Homo_sapiens 0 320
ENST00000529757 PACS1-004 protein_coding Homo_sapiens 0 1914
ENST00000531298 PACS1-007 nonsense_mediated_decay Homo_sapiens 6e-33 145
ENST00000531597 PACS1-014 protein_coding Homo_sapiens 0 584
ENST00000533756 PACS1-017 protein_coding Homo_sapiens 0 361
ENST00000533811 PACS1-008 retained_intron Homo_sapiens 0 292
ENST00000534273 PACS1-009 retained_intron Homo_sapiens 0 327

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