C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basic helix-loop-helix family, member e22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026120 Bhlhe22-001 ENSMUSG00000025128 10090 + 3:18054174-18057517 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026120 0.753±0.66 4.562±0.80 0.089±0.00 11.278±5.87 0.135±0.07 0.161±0.08 0.137±0.03 0.798±0.12 0.037±0.03 0.580±0.18 0.026±0.01 2.525±1.41 0.109±0.12 0.067±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NS CIL_0007NS_0006 UCNEbase 3:16820555-18937830
CIL_0008AX CIL_0008AX_0002 VISTA 3:17757876-18358899
CIL_0008IQ CIL_0008IQ_0002 VISTA 3:18041076-18642204
CIL_00031Q CIL_00031Q_0002 CGP 3:18054174-18243338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IMP sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0021540 IMP corpus callosum morphogenesis
GO:0021796 IMP cerebral cortex regionalization
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0021957 IGI corticospinal tract morphogenesis
GO:0021960 IMP anterior commissure morphogenesis
GO:0030182 IMP neuron differentiation
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0060040 IMP retinal bipolar neuron differentiation
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000147658 bhlhe22-001 protein_coding Danio_rerio 2e-30 139
ENST00000321870 BHLHE22-001 protein_coding Homo_sapiens 0 2289

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