C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: progressive external ophthalmoplegia 1 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026227 Peo1-201 ENSMUSG00000025209 10090 + 19:45006558-45012762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026227
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026227 6.563±2.58 6.398±1.98 5.261±0.25 5.130±0.95 4.011±1.50 3.929±1.06 6.852±0.63 7.938±0.45 7.550±0.95 3.409±0.50 6.444±0.38 10.840±4.11 8.299±4.32 2.628±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_000940 CIL_000940_0002 VISTA 19:44925545-45526320
CIL_0005ND CIL_0005ND_0002 CGP 19:45006558-45027104

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002020 IEA protease binding
GO:0003678 IDA DNA helicase activity
GO:0003697 ISS single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006264 IMP mitochondrial DNA replication
GO:0006268 IDA DNA unwinding involved in DNA replication
GO:0006390 IEA transcription from mitochondrial promoter
GO:0034214 IEA protein hexamerization
GO:0042645 ISS mitochondrial nucleoid
GO:0043139 ISS 5'-3' DNA helicase activity
GO:0051260 IEA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109494 C12H10orf2-201 protein_coding Danio_rerio 0 398
ENST00000311916 C10orf2-001 protein_coding Homo_sapiens 0 2145
ENST00000370228 C10orf2-002 protein_coding Homo_sapiens 0 1746
ENST00000473656 C10orf2-004 processed_transcript Homo_sapiens 0 994
ENST00000476766 C10orf2-003 processed_transcript Homo_sapiens 0 505

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