C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 4 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026265 Bbs4-201 ENSMUSG00000025235 10090 - 9:59321966-59353508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026265 1.055±0.51 0.992±0.43 3.682±1.29 8.150±4.44 1.502±0.51 0.825±0.21 0.491±0.13 1.753±0.53 0.659±0.30 1.422±0.57 2.393±0.29 3.295±2.24 2.440±0.58 4.255±1.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0000242 ISS pericentriolar material
GO:0000281 IEA mitotic cytokinesis
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001843 IMP neural tube closure
GO:0001895 IMP retina homeostasis
GO:0003085 IMP negative regulation of systemic arterial blood pressure
GO:0003777 ISS microtubule motor activity
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005814 IEA centriole
GO:0005929 ISS cilium
GO:0007286 IMP spermatid development
GO:0007608 IMP sensory perception of smell
GO:0008104 IMP protein localization
GO:0008152 IEA metabolic process
GO:0010629 IMP negative regulation of gene expression
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016358 IMP dendrite development
GO:0019216 IMP regulation of lipid metabolic process
GO:0021756 IMP striatum development
GO:0021766 IMP hippocampus development
GO:0021987 IMP cerebral cortex development
GO:0030534 IMP adult behavior
GO:0031513 IEA nonmotile primary cilium
GO:0031514 IMP motile cilium
GO:0032465 IEA regulation of cytokinesis
GO:0033210 IMP leptin-mediated signaling pathway
GO:0033365 IDA protein localization to organelle
GO:0034451 ISS centriolar satellite
GO:0034452 IEA dynactin binding
GO:0034454 IEA microtubule anchoring at centrosome
GO:0034464 IDA BBSome
GO:0035058 IMP nonmotile primary cilium assembly
GO:0036064 ISO ciliary basal body
GO:0038108 IMP negative regulation of appetite by leptin-mediated signaling pathway
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0042384 IMP cilium assembly
GO:0043014 IEA alpha-tubulin binding
GO:0044321 IMP response to leptin
GO:0045444 IEP fat cell differentiation
GO:0045494 IMP photoreceptor cell maintenance
GO:0045724 IMP positive regulation of cilium assembly
GO:0046548 IMP retinal rod cell development
GO:0048487 IEA beta-tubulin binding
GO:0048854 IMP brain morphogenesis
GO:0051297 ISS centrosome organization
GO:0051457 IEA maintenance of protein location in nucleus
GO:0060170 IEA ciliary membrane
GO:0060271 IMP cilium morphogenesis
GO:0060296 IMP regulation of cilium beat frequency involved in ciliary motility
GO:0071539 IEA protein localization to centrosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268057 BBS4-001 protein_coding Homo_sapiens 0 1899
ENST00000395205 BBS4-201 protein_coding Homo_sapiens 0 1807
ENST00000561914 BBS4-008 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000562084 BBS4-005 nonsense_mediated_decay Homo_sapiens 0 1858
ENST00000562219 BBS4-004 retained_intron Homo_sapiens 0 556
ENST00000563600 BBS4-010 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000564239 BBS4-012 processed_transcript Homo_sapiens 0 547
ENST00000565160 BBS4-017 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000566197 BBS4-013 protein_coding Homo_sapiens 0 527
ENST00000566400 BBS4-003 nonsense_mediated_decay Homo_sapiens 0 1807
ENST00000566829 BBS4-011 protein_coding Homo_sapiens 0 444
ENST00000566938 BBS4-019 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000567279 BBS4-002 nonsense_mediated_decay Homo_sapiens 0 1831
ENST00000568535 BBS4-014 retained_intron Homo_sapiens 0 435
ENST00000569151 BBS4-015 retained_intron Homo_sapiens 0 324
ENST00000569338 BBS4-016 protein_coding Homo_sapiens 0 739
ENST00000569440 BBS4-009 nonsense_mediated_decay Homo_sapiens 0 521

Loading