C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex central element protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026553 Syce1-201 ENSMUSG00000025480 10090 - 7:140777229-140787854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026553 0.097±0.05 0.065±0.00 0.039±0.02 0.079±0.00 0.098±0.04 0.117±0.02 0.049±0.02 0.053±0.02 0.074±0.03 0.246±0.08 0.031±0.01 0.273±0.11 1.323±1.02 165.576±25.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001G CIL_00001G_0002 CGP 7:140763739-140787854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000795 ISS synaptonemal complex
GO:0000801 IDA central element
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0007130 IC synaptonemal complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303903 SYCE1-004 protein_coding Homo_sapiens 0 656
ENST00000343131 SYCE1-201 protein_coding Homo_sapiens 0 656
ENST00000368517 SYCE1-001 protein_coding Homo_sapiens 0 649
ENST00000368520 CYP2E1-004 retained_intron Homo_sapiens 0.0000000001 75
ENST00000479535 SYCE1-002 retained_intron Homo_sapiens 0 496

Loading