C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9 (sodium/hydrogen exchanger), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027233 Slc9a4-201 ENSMUSG00000026065 10090 + 1:40580227-40630731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027233 0.079±0.03 0.032±0.01 2.804±0.69 0.184±0.24 0.194±0.05 0.126±0.08 0.064±0.01 0.836±0.21 0.001±0.00 0.497±0.10 0.203±0.06 0.085±0.05 0.009±0.00 1.124±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004R2 CIL_0004R2_0002 CGP 1:40515362-40630731
CIL_0004QU CIL_0004QU_0002 CGP 1:40580227-40768885

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001696 IMP gastric acid secretion
GO:0002064 IMP epithelial cell development
GO:0005886 IEA plasma membrane
GO:0006885 IEA regulation of pH
GO:0015385 IEA sodium:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233969 SLC9A2-001 protein_coding Homo_sapiens 0 412
ENST00000295269 SLC9A4-001 protein_coding Homo_sapiens 0 2161
ENST00000492154 SLC9A4-002 retained_intron Homo_sapiens 0 566

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