C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: major histocompatibility complex, class I-related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027744 Mr1-001 ENSMUSG00000026471 10090 - 1:155127878-155146783 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027744
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027744 5.090±0.43 5.161±0.94 4.700±0.42 0.332±0.12 3.610±1.68 0.987±0.17 1.496±0.21 1.326±0.38 0.631±0.38 4.750±1.91 4.159±0.73 5.050±1.32 0.629±0.39 0.464±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0002 VISTA 1:154738612-155340657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002367 IMP cytokine production involved in immune response
GO:0002474 IEA antigen processing and presentation of peptide antigen via MHC class I
GO:0005783 ISO endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0032611 IMP interleukin-1 beta production
GO:0032620 IMP interleukin-17 production
GO:0042605 IEA peptide antigen binding
GO:0042612 IEA MHC class I protein complex
GO:0045087 IEA innate immune response
GO:0050829 IMP defense response to Gram-negative bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282990 MR1-002 protein_coding Homo_sapiens 0 617
ENST00000367578 MR1-004 retained_intron Homo_sapiens 0 616
ENST00000367579 MR1-003 protein_coding Homo_sapiens 0 305
ENST00000367580 MR1-001 protein_coding Homo_sapiens 0 869
ENST00000434571 MR1-201 protein_coding Homo_sapiens 0 623
ENST00000438435 MR1-005 processed_transcript Homo_sapiens 0 595
ENST00000486453 MR1-006 retained_intron Homo_sapiens 0 307
ENST00000503142 RP11-46A10.6-001 unprocessed_pseudogene Homo_sapiens 0 534
ENST00000614012 MR1-202 protein_coding Homo_sapiens 0 869
ENST00000617803 MR1-203 protein_coding Homo_sapiens 0 617

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