C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Mix1 homeobox-like 1 (Xenopus laevis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027778 Mixl1-001 ENSMUSG00000026497 10090 - 1:180693043-180697034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000027778
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000027778 0.019±0.00 0.042±0.01 0.016±0.00 0.035±0.00 0.076±0.04 0.016±0.00 0.135±0.09 0.050±0.00 0.218±0.16 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MQ CIL_0005MQ_0002 CGP 1:180641150-180697034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000987 IDA core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001190 IDA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001706 IMP endoderm formation
GO:0002244 IDA hematopoietic progenitor cell differentiation
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007369 IMP gastrulation
GO:0007492 IMP endoderm development
GO:0007507 IMP heart development
GO:0030097 IDA hemopoiesis
GO:0035987 IDA endodermal cell differentiation
GO:0042074 IMP cell migration involved in gastrulation
GO:0042803 IPI protein homodimerization activity
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048565 IMP digestive tract development
GO:1901533 IDA negative regulation of hematopoietic progenitor cell differentiation
GO:2000382 IDA positive regulation of mesoderm development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334889 RAX-001 protein_coding Homo_sapiens 0.0000001 64

Loading