C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retina and anterior neural fold homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334889 RAX-001 ENSG00000134438 9606 - 18:59267035-59273393 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071E CIL_00071E_0001 CGP 18:59220168-59274086
CIL_0007FD CIL_0007FD_0001 CGP 18:59267035-59318649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IEA pattern specification process
GO:0007420 IEA brain development
GO:0007601 TAS visual perception
GO:0021854 IEA hypothalamus development
GO:0043010 IEA camera-type eye development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060173 IEA limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025396 Rax-201 protein_coding Mus_musculus 0 1031
ENSMUST00000027778 Mixl1-001 protein_coding Mus_musculus 0.0000001 64

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