C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DDB1 and CUL4 associated factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027856 Dcaf6-001 ENSMUSG00000026571 10090 - 1:165329511-165460465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027856 13.024±2.07 20.864±5.06 11.678±1.61 12.317±7.73 12.686±3.42 8.248±2.49 5.943±0.72 9.604±1.06 13.020±4.19 13.704±0.75 24.976±3.29 12.747±3.33 7.877±2.87 18.952±4.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005CW CIL_0005CW_0002 CGP 1:165301863-165460465
CIL_0005MN CIL_0005MN_0002 CGP 1:165329511-165481214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016567 IEA protein ubiquitination
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0080008 ISS Cul4-RING E3 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271373 MPC2-002 protein_coding Homo_sapiens 6e-24 115
ENST00000312263 DCAF6-003 protein_coding Homo_sapiens 0 2276
ENST00000367840 DCAF6-001 protein_coding Homo_sapiens 0 1866
ENST00000367843 DCAF6-011 protein_coding Homo_sapiens 0 1917
ENST00000432587 DCAF6-201 protein_coding Homo_sapiens 0 1424
ENST00000450548 DCAF6-007 processed_transcript Homo_sapiens 0 553
ENST00000455334 DCAF6-009 processed_transcript Homo_sapiens 0 966
ENST00000470721 DCAF6-002 nonsense_mediated_decay Homo_sapiens 0 1916
ENST00000470919 DCAF6-008 processed_transcript Homo_sapiens 0 835
ENST00000478668 DCAF6-006 retained_intron Homo_sapiens 0 335
ENST00000489398 DCAF6-004 retained_intron Homo_sapiens 0 1120
ENST00000491067 DCAF6-005 processed_transcript Homo_sapiens 0 599
ENST00000560524 RP11-37J13.1-001 processed_pseudogene Homo_sapiens 0 1609

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