C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephrosis 2, podocin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027896 Nphs2-201 ENSMUSG00000026602 10090 + 1:156310727-156328035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000027896
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000027896 0.039±0.02 0.158±0.05 0.032±0.01 0.067±0.03 0.029±0.01 0.024±0.01 24.714±4.07 0.017±0.01 0.097±0.01 0.014±0.00 0.343±0.12 0.033±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005911 IEA cell-cell junction
GO:0007588 IEA excretion
GO:0031235 IDA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0031532 IEA actin cytoskeleton reorganization
GO:0036057 IDA slit diaphragm
GO:0043234 IEA protein complex
GO:0045121 IEA membrane raft
GO:0070062 IEA extracellular vesicular exosome
GO:0072249 IEA metanephric glomerular visceral epithelial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367615 NPHS2-001 protein_coding Homo_sapiens 0 1197
ENST00000367616 NPHS2-002 protein_coding Homo_sapiens 0 496

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