C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nephrosis 2, idiopathic, steroid-resistant (podocin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367616 NPHS2-002 ENSG00000116218 9606 - 1:179550539-179575952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverENST00000367616
Transcript ID Bladder Breast Kidney Liver
ENST00000367616 4.671±0.00 0.232±0.00 15.505±0.00 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WC CIL_0001WC_0002 CGP 1:179365720-179575952
CIL_0001WB CIL_0001WB_0002 CGP 1:179550539-179691272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007588 IEA excretion
GO:0031235 IDA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0031532 IDA actin cytoskeleton reorganization
GO:0036057 IDA slit diaphragm
GO:0043234 IDA protein complex
GO:0045121 IDA membrane raft
GO:0070062 IDA extracellular vesicular exosome
GO:0072249 IEP metanephric glomerular visceral epithelial cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027896 Nphs2-201 protein_coding Mus_musculus 0 496

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