C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basic leucine zipper transcription factor, ATF-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027943 Batf3-201 ENSMUSG00000026630 10090 + 1:191098414-191108943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027943 2.748±1.20 1.948±0.47 1.207±0.04 0.565±0.13 6.970±1.78 1.667±0.82 0.569±0.20 1.531±0.43 1.040±0.35 1.974±0.25 0.433±0.36 2.424±0.66 11.320±5.00 0.350±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0002 VISTA 1:190939014-191541717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009615 IMP response to virus
GO:0043011 IMP myeloid dendritic cell differentiation
GO:0097028 IMP dendritic cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243440 BATF3-001 protein_coding Homo_sapiens 0 279
ENST00000471382 BATF3-003 processed_transcript Homo_sapiens 4e-30 135
ENST00000478275 BATF3-002 processed_transcript Homo_sapiens 0 268

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