C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upper zone of growth plate and cartilage matrix associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027978 Ucma-001 ENSMUSG00000026668 10090 + 2:4976181-4985745 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverLungOvaryPlacentaENSMUST00000027978
Transcript ID Brain Colon Liver Lung Ovary Placenta
ENSMUST00000027978 0.250±0.22 0.103±0.00 0.017±0.00 0.099±0.05 0.135±0.05 0.054±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763
CIL_00015C CIL_00015C_0002 CGP 2:4919019-4985748
CIL_0002GA CIL_0002GA_0002 CGP 2:4976122-5012791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0016235 IDA aggresome
GO:0031012 IDA extracellular matrix
GO:0045668 IDA negative regulation of osteoblast differentiation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378681 UCMA-001 protein_coding Homo_sapiens 0 355
ENST00000463405 UCMA-002 protein_coding Homo_sapiens 0 390

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