C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: torsin family 1, member A (torsin A)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028200 Tor1a-001 ENSMUSG00000026849 10090 - 2:30960627-30967933 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028200 19.585±2.57 21.071±4.48 15.579±3.64 19.536±6.15 17.698±1.92 27.981±3.58 4.121±0.37 18.046±2.87 26.382±3.64 15.348±1.91 2.136±0.33 25.747±5.15 20.241±4.97 3.957±1.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LZ CIL_0002LZ_0004 CGP 2:30952959-30967933
CIL_0005UA CIL_0005UA_0002 CGP 2:30960627-30982201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000338 ISS protein deneddylation
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0005856 IEA cytoskeleton
GO:0006200 IEA ATP catabolic process
GO:0006979 IEA response to oxidative stress
GO:0006996 IMP organelle organization
GO:0006998 IMP nuclear envelope organization
GO:0007155 ISS cell adhesion
GO:0008021 ISS synaptic vesicle
GO:0008092 IPI cytoskeletal protein binding
GO:0016020 IEA membrane
GO:0016887 ISS ATPase activity
GO:0019894 IEA kinesin binding
GO:0030054 IEA cell junction
GO:0030141 ISS secretory granule
GO:0030426 ISS growth cone
GO:0030659 ISS cytoplasmic vesicle membrane
GO:0031175 ISS neuron projection development
GO:0031965 IEA nuclear membrane
GO:0034504 IMP protein localization to nucleus
GO:0042406 ISS extrinsic component of endoplasmic reticulum membrane
GO:0043005 IEA neuron projection
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044319 IMP wound healing, spreading of cells
GO:0045104 ISS intermediate filament cytoskeleton organization
GO:0048489 ISS synaptic vesicle transport
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization
GO:0051584 ISS regulation of dopamine uptake involved in synaptic transmission
GO:0051787 IPI misfolded protein binding
GO:0061077 ISS chaperone-mediated protein folding
GO:0070062 IEA extracellular vesicular exosome
GO:0071712 IDA ER-associated misfolded protein catabolic process
GO:0071763 IMP nuclear membrane organization
GO:0072321 ISS chaperone-mediated protein transport
GO:1900244 ISS positive regulation of synaptic vesicle endocytosis
GO:2000008 ISS regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351698 TOR1A-001 protein_coding Homo_sapiens 0 1085
ENST00000473084 TOR1A-002 processed_transcript Homo_sapiens 0 521

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