C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029002 Stmn2-201 ENSMUSG00000027500 10090 + 3:8509527-8561604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029002 1.658±0.15 2.405±0.86 5.134±0.00 238.949±96.24 1.410±0.39 4.985±1.30 2.232±0.26 1.392±0.75 0.220±0.20 12.391±1.49 0.693±0.19 0.634±0.37 1.437±0.67 0.053±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OY CIL_0002OY_0002 CGP 3:8509527-8667039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0007026 IEA negative regulation of microtubule depolymerization
GO:0010976 ISS positive regulation of neuron projection development
GO:0010977 IEA negative regulation of neuron projection development
GO:0016020 IEA membrane
GO:0030027 ISS lamellipodium
GO:0030426 IDA growth cone
GO:0031115 ISS negative regulation of microtubule polymerization
GO:0031117 IEA positive regulation of microtubule depolymerization
GO:0031982 IEA vesicle
GO:0043005 ISS neuron projection
GO:0043025 ISS neuronal cell body
GO:0048306 IEA calcium-dependent protein binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:1990090 ISS cellular response to nerve growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041007 stmn1b-001 protein_coding Danio_rerio 5e-29 134
ENST00000220876 STMN2-001 protein_coding Homo_sapiens 0 2446
ENST00000518111 STMN2-008 protein_coding Homo_sapiens 0 730
ENST00000518491 STMN2-007 protein_coding Homo_sapiens 0 758

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