C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stathmin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220876 STMN2-001 ENSG00000104435 9606 + 8:79610814-79666175 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverOvaryPlacentaTestisENST00000220876
Transcript ID Adipose Brain Breast Colon Liver Ovary Placenta Testis
ENST00000220876 0.032±0.00 85.543±0.00 1.690±0.51 4.783±2.51 0.028±0.00 0.176±0.13 0.248±0.10 0.231±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OY CIL_0002OY_0001 CGP 8:79610814-79767863

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0010976 IDA positive regulation of neuron projection development
GO:0010977 IDA negative regulation of neuron projection development
GO:0016020 IEA membrane
GO:0030027 IDA lamellipodium
GO:0030426 IDA growth cone
GO:0031110 IEA regulation of microtubule polymerization or depolymerization
GO:0031115 IDA negative regulation of microtubule polymerization
GO:0031117 IDA positive regulation of microtubule depolymerization
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0048306 IPI calcium-dependent protein binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:1990090 IDA cellular response to nerve growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029002 Stmn2-201 protein_coding Mus_musculus 0 2446
ENSMUST00000105868 Stmn1-004 protein_coding Mus_musculus 2e-38 165
ENSMUST00000105867 Stmn1-005 protein_coding Mus_musculus 2e-38 165
ENSMUST00000030636 Stmn1-001 protein_coding Mus_musculus 2e-38 165
ENSMUST00000127279 Stmn1-003 protein_coding Mus_musculus 3e-36 158
ENSDART00000041007 stmn1b-001 protein_coding Danio_rerio 4e-30 137

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