C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vascular cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029574 Vcam1-201 ENSMUSG00000027962 10090 - 3:116110020-116129688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029574
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029574 2.630±0.48 1.177±0.29 16.945±1.74 5.925±1.51 2.885±0.95 1.052±0.30 2.147±0.16 2.708±0.37 11.307±11.51 6.638±0.63 0.735±0.35 2.501±1.37 1.802±0.83 2.496±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ET CIL_0007ET_0002 CGP 3:116110020-116253484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0002102 IEA podosome
GO:0002526 IEA acute inflammatory response
GO:0002544 IEA chronic inflammatory response
GO:0005178 ISO integrin binding
GO:0005615 IEA extracellular space
GO:0005769 IEA early endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005902 IEA microvillus
GO:0007155 IDA cell adhesion
GO:0007157 IMP heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007507 IMP heart development
GO:0007568 IEA aging
GO:0007584 IEA response to nutrient
GO:0008131 IEA primary amine oxidase activity
GO:0009308 IEA amine metabolic process
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0010043 IEA response to zinc ion
GO:0010212 IEA response to ionizing radiation
GO:0016021 IEA integral component of membrane
GO:0022614 IEA membrane to membrane docking
GO:0030175 IEA filopodium
GO:0032496 IEA response to lipopolysaccharide
GO:0035094 IEA response to nicotine
GO:0035924 IEA cellular response to vascular endothelial growth factor stimulus
GO:0042102 IEA positive regulation of T cell proliferation
GO:0042383 IEA sarcolemma
GO:0045177 IEA apical part of cell
GO:0045471 IEA response to ethanol
GO:0050839 IEA cell adhesion molecule binding
GO:0050901 IEA leukocyte tethering or rolling
GO:0055114 IEA oxidation-reduction process
GO:0060326 IEA cell chemotaxis
GO:0060669 IMP embryonic placenta morphogenesis
GO:0060710 IMP chorio-allantoic fusion
GO:0070062 IEA extracellular vesicular exosome
GO:0071065 IEA alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex
GO:0071333 IDA cellular response to glucose stimulus
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294728 VCAM1-001 protein_coding Homo_sapiens 0 1727
ENST00000347652 VCAM1-002 protein_coding Homo_sapiens 0 782
ENST00000370115 VCAM1-003 protein_coding Homo_sapiens 0 780
ENST00000370119 VCAM1-004 protein_coding Homo_sapiens 0 1472

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