C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 55A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029875 Tmem55a-001 ENSMUSG00000028221 10090 + 4:14864076-14915176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029875 13.136±3.20 30.753±2.84 17.057±3.74 13.536±6.45 12.340±3.61 14.322±1.74 9.470±1.57 16.845±2.07 9.168±3.43 15.336±2.59 6.796±0.61 18.897±7.05 8.697±6.55 1.511±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015I CIL_00015I_0002 CGP 4:14864076-15149794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285419 TMEM55A-001 protein_coding Homo_sapiens 0 1736
ENST00000518359 TMEM55A-005 nonsense_mediated_decay Homo_sapiens 0 665
ENST00000518869 TMEM55A-003 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000520014 TMEM55A-004 protein_coding Homo_sapiens 0 924
ENST00000520709 TMEM55A-002 nonsense_mediated_decay Homo_sapiens 0 466

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