C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: perlecan (heparan sulfate proteoglycan 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030547 Hspg2-001 ENSMUSG00000028763 10090 + 4:137468769-137570630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030547 11.301±3.46 11.789±4.49 10.264±6.66 1.188±0.50 13.304±7.70 7.739±3.17 10.513±4.72 4.054±0.69 0.582±0.19 10.544±2.82 6.126±1.18 12.972±3.79 29.054±26.22 0.745±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001958 IMP endochondral ossification
GO:0002062 IMP chondrocyte differentiation
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0007420 IMP brain development
GO:0008104 IMP protein localization
GO:0030198 IMP extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048738 IMP cardiac muscle tissue development
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344642 LDLRAD2-001 protein_coding Homo_sapiens 7e-20 104
ENST00000374695 HSPG2-001 protein_coding Homo_sapiens 0 12560
ENST00000412328 HSPG2-003 protein_coding Homo_sapiens 0 505
ENST00000427897 HSPG2-008 protein_coding Homo_sapiens 0 503
ENST00000453796 HSPG2-015 protein_coding Homo_sapiens 0 496
ENST00000471322 HSPG2-014 processed_transcript Homo_sapiens 0 217
ENST00000480900 HSPG2-006 retained_intron Homo_sapiens 0 291
ENST00000484271 LDLRAD2-002 processed_transcript Homo_sapiens 0.0000000006 69
ENST00000486901 HSPG2-002 processed_transcript Homo_sapiens 0.000000002 69
ENST00000493940 HSPG2-009 processed_transcript Homo_sapiens 5e-24 115
ENST00000543870 LDLRAD2-201 protein_coding Homo_sapiens 0.0000000008 69

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