C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heparan sulfate proteoglycan 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374695 HSPG2-001 ENSG00000142798 9606 - 1:21822245-21937297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374695
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374695 89.008±0.00 17.791±0.00 0.460±0.42 25.069±15.85 21.917±15.49 9.528±5.54 6.541±4.11 6.176±3.01 5.513±2.33 7.925±0.71 9.906±4.63 27.161±5.42 10.958±10.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WF CIL_0002WF_0002 CGP 1:21678298-21825221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001525 IEA angiogenesis
GO:0001958 IEA endochondral ossification
GO:0002062 IEA chondrocyte differentiation
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005605 IEA basal lamina
GO:0005615 IDA extracellular space
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007420 IEA brain development
GO:0007603 TAS phototransduction, visible light
GO:0008022 IPI protein C-terminus binding
GO:0008104 IEA protein localization
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031012 IDA extracellular matrix
GO:0042157 TAS lipoprotein metabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048738 IEA cardiac muscle tissue development
GO:0060351 IEA cartilage development involved in endochondral bone morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171332 Hspg2-201 protein_coding Mus_musculus 0 12620
ENSMUST00000030547 Hspg2-001 protein_coding Mus_musculus 0 12560
ENSDART00000111029 hspg2-201 protein_coding Danio_rerio 1.00053e-42 182
ENSDART00000112124 hspg2-001 protein_coding Danio_rerio 1.00053e-42 182

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