C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin light chain, phosphorylatable, fast skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032910 Mylpf-001 ENSMUSG00000030672 10090 + 7:127211608-127214298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032910 0.193±0.06 0.115±0.00 0.501±0.09 1.806±1.03 621.402±525.15 0.196±0.09 0.356±0.13 36.267±20.87 7.053±10.11 43.178±42.38 10449.339±631.32 0.755±0.41 1.029±0.27 0.319±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V7 CIL_0003V7_0003 CGP 7:127197465-127214298

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005765 IEA lysosomal membrane
GO:0006955 IEA immune response
GO:0007519 IMP skeletal muscle tissue development
GO:0008307 IMP structural constituent of muscle
GO:0016459 IEA myosin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075465 mylpfa-001 protein_coding Danio_rerio 0 372
ENSDART00000142582 mylpfa-002 protein_coding Danio_rerio 0 265
ENST00000322861 MYLPF-001 protein_coding Homo_sapiens 0 697
ENST00000400159 MYL5-001 protein_coding Homo_sapiens 9e-37 158
ENST00000503300 MYL5-003 nonsense_mediated_decay Homo_sapiens 7e-22 110
ENST00000505477 MYL5-009 protein_coding Homo_sapiens 8e-37 158
ENST00000506838 MYL5-002 protein_coding Homo_sapiens 4e-36 158
ENST00000507804 MYL5-008 protein_coding Homo_sapiens 1e-35 154
ENST00000511290 MYL5-004 protein_coding Homo_sapiens 1e-36 158
ENST00000513662 MYL5-007 nonsense_mediated_decay Homo_sapiens 3e-22 110
ENST00000563728 MYLPF-004 retained_intron Homo_sapiens 0 213

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