C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 1 binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033674 Itgb1bp2-001 ENSMUSG00000031312 10090 + X:101449088-101453541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033674 0.051±0.02 0.112±0.03 3.837±0.09 0.581±0.16 8.907±9.72 0.380±0.14 104.105±3.92 0.933±0.69 0.441±0.73 4.438±3.01 72.613±7.39 0.237±0.17 0.237±0.13 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068D CIL_00068D_0002 CGP X:101429318-101453541
CIL_00066O CIL_00066O_0002 CGP X:101449088-101601789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0008270 IDA zinc ion binding
GO:0017124 IEA SH3 domain binding
GO:0030018 IDA Z disc

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110199 prdm4-201 protein_coding Danio_rerio 0.00002 55
ENSDART00000147629 prdm4-001 protein_coding Danio_rerio 0.00002 55
ENST00000235372 PRDM2-001 protein_coding Homo_sapiens 0.00008 53
ENST00000311066 PRDM2-201 protein_coding Homo_sapiens 0.00008 53
ENST00000343137 PRDM2-004 protein_coding Homo_sapiens 0.00008 53
ENST00000373829 ITGB1BP2-001 protein_coding Homo_sapiens 0 1552
ENST00000413440 PRDM2-003 protein_coding Homo_sapiens 0.00008 53
ENST00000465388 ITGB1BP2-004 processed_transcript Homo_sapiens 0 287
ENST00000475413 ITGB1BP2-003 processed_transcript Homo_sapiens 0 407
ENST00000483897 ITGB1BP2-002 processed_transcript Homo_sapiens 0 453
ENST00000538820 ITGB1BP2-201 protein_coding Homo_sapiens 0 1402

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