C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 2, with ZNF domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343137 PRDM2-004 ENSG00000116731 9606 + 1:13749415-13787657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343137 2.106±0.00 4.200±0.00 1.403±0.00 3.607±0.00 3.124±0.00 1.667±0.00 2.017±1.62 1.886±0.95 1.138±0.53 1.332±0.67 2.410±0.72 4.625±0.96 1.339±0.33 3.439±0.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005634 NAS:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0008270 NAS zinc ion binding
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105778 Prdm2-001 protein_coding Mus_musculus 0 3882
ENSMUST00000154280 Prdm2-003 protein_coding Mus_musculus 8e-26 124
ENSMUST00000134791 Prdm2-002 protein_coding Mus_musculus 8e-16 92
ENSMUST00000033674 Itgb1bp2-001 protein_coding Mus_musculus 0.00008 53

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