C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: three prime repair exonuclease 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033738 Trex2-001 ENSMUSG00000031372 10090 - X:73433705-73435344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000033738
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000033738 0.065±0.03 0.050±0.02 1.513±0.13 0.056±0.03 0.741±0.41 0.098±0.04 0.030±0.00 0.044±0.02 0.021±0.01 15.925±15.45 0.319±0.19 0.067±0.01 0.033±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000119 CIL_000119_0002 CGP X:73411096-73435344
CIL_00011A CIL_00011A_0002 CGP X:73433705-73459044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0000738 IEA DNA catabolic process, exonucleolytic
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0006259 ISS DNA metabolic process
GO:0006281 IEA DNA repair
GO:0008296 ISS 3'-5'-exodeoxyribonuclease activity
GO:0008853 IEA exodeoxyribonuclease III activity
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330912 TREX2-003 protein_coding Homo_sapiens 0 701
ENST00000334497 TREX2-001 protein_coding Homo_sapiens 0 675
ENST00000338525 TREX2-004 protein_coding Homo_sapiens 0 675
ENST00000370212 TREX2-201 protein_coding Homo_sapiens 0 675
ENST00000370231 TREX2-202 protein_coding Homo_sapiens 0 675
ENST00000370232 TREX2-002 protein_coding Homo_sapiens 0 675
ENST00000393862 TREX2-005 protein_coding Homo_sapiens 0 675

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