C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034378 Slc7a6-201 ENSMUSG00000031904 10090 + 8:106168875-106198704 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034378 14.761±1.59 10.135±2.26 15.895±2.55 15.016±9.22 13.669±1.97 6.044±0.87 3.703±0.34 2.846±0.47 1.531±1.56 8.657±0.40 2.635±0.34 25.686±8.25 9.267±7.16 13.418±8.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FI CIL_0000FI_0002 CGP 8:106150399-106198704
CIL_00055A CIL_00055A_0002 CGP 8:106168875-106210933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0003674 ND molecular_function
GO:0005886 IEA plasma membrane
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219343 SLC7A6-001 protein_coding Homo_sapiens 0 2021
ENST00000379152 SLC7A6-004 nonsense_mediated_decay Homo_sapiens 0 965
ENST00000562863 SLC7A6-013 retained_intron Homo_sapiens 0 213
ENST00000563080 SLC7A6-002 nonsense_mediated_decay Homo_sapiens 0 658
ENST00000563146 SLC7A6-014 protein_coding Homo_sapiens 0 329
ENST00000563208 SLC7A6-011 retained_intron Homo_sapiens 0 460
ENST00000564708 SLC7A6-009 protein_coding Homo_sapiens 0 263
ENST00000566454 SLC7A6-003 protein_coding Homo_sapiens 0 2021
ENST00000566579 SLC7A6-010 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000566834 SLC7A6-007 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000567325 SLC7A6-015 retained_intron Homo_sapiens 0 627
ENST00000567346 SLC7A6-012 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000568024 SLC7A6-006 protein_coding Homo_sapiens 0 453
ENST00000618043 SLC7A6-201 protein_coding Homo_sapiens 0 989

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