C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034511 Trim29-201 ENSMUSG00000032013 10090 + 9:43310763-43336125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034511 0.308±0.10 0.070±0.03 28.788±3.18 1.099±0.04 10.011±4.00 0.207±0.08 0.111±0.07 0.529±0.21 0.042±0.04 6.800±5.10 0.198±0.15 0.067±0.03 0.690±0.36 0.150±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099Y CIL_00099Y_0002 VISTA 9:43264181-43868174

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0002039 IDA p53 binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:1900181 IDA negative regulation of protein localization to nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341846 TRIM29-001 protein_coding Homo_sapiens 0 1962
ENST00000475051 TRIM29-004 nonsense_mediated_decay Homo_sapiens 0 1683
ENST00000529044 TRIM29-005 protein_coding Homo_sapiens 0 1134
ENST00000530470 TRIM29-015 retained_intron Homo_sapiens 0 353
ENST00000532195 TRIM29-014 retained_intron Homo_sapiens 0 353

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