C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00099Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1915 VISTA 9606 11:119589021-120192949
GeneTranscriptPositionBiotype
ENSG00000110400 (PVRL1)
poliovirus receptor-related 1 (herpesvirus entry mediator C) 		ENST00000264025 (PVRL1-002) 119660992-119729084 protein_coding
ENST00000340882 (PVRL1-003) 119674592-119728553 protein_coding
ENST00000341398 (PVRL1-001) 119638098-119728553 protein_coding
ENST00000524429 (PVRL1-005) 119674382-119675669 retained_intron
ENST00000524510 (PVRL1-004) 119677095-119687357 processed_transcript
ENST00000531468 (PVRL1-007) 119623408-119638200 processed_transcript
ENST00000532197 (PVRL1-006) 119676815-119677601 retained_intron
ENSG00000137699 (TRIM29)
tripartite motif containing 29 		ENST00000341846 (TRIM29-001) 120111275-120138453 protein_coding
ENST00000475051 (TRIM29-004) 120112410-120138114 nonsense_mediated_decay
ENST00000524664 (TRIM29-019) 120112410-120118867 processed_transcript
ENST00000524816 (TRIM29-007) 120111298-120123271 protein_coding
ENST00000524956 (TRIM29-017) 120115340-120121980 protein_coding
ENST00000525327 (TRIM29-016) 120112410-120123442 protein_coding
ENST00000525887 (TRIM29-008) 120112410-120121993 processed_transcript
ENST00000526161 (TRIM29-009) 120112410-120117106 retained_intron
ENST00000526881 (TRIM29-018) 120115364-120120900 protein_coding
ENST00000528870 (TRIM29-006) 120112410-120125578 protein_coding
ENST00000529011 (TRIM29-013) 120137740-120138453 protein_coding
ENST00000529040 (TRIM29-010) 120137917-120185529 protein_coding
ENST00000529044 (TRIM29-005) 120112410-120128913 protein_coding
ENST00000529495 (TRIM29-012) 120137747-120139822 protein_coding
ENST00000530470 (TRIM29-015) 120122952-120126357 retained_intron
ENST00000530919 (TRIM29-022) 120112410-120118041 retained_intron
ENST00000531555 (TRIM29-021) 120112410-120123033 nonsense_mediated_decay
ENST00000532195 (TRIM29-014) 120127408-120128910 retained_intron
ENST00000532833 (TRIM29-011) 120137765-120185423 protein_coding
ENST00000533302 (TRIM29-020) 120112410-120123032 protein_coding
ENSG00000176984 (AP000679.2)
 ENST00000319763 (AP000679.2-001) 120168977-120171679 antisense
ENST00000530303 (AP000679.2-002) 120168977-120170153 antisense
ENSG00000199217 (RNU6-1123P)
RNA, U6 small nuclear 1123, pseudogene 		ENST00000362347 (RNU6-1123P-201) 119656311-119656416 snRNA
ENSG00000230716 (KRT8P7)
keratin 8 pseudogene 7 		ENST00000533003 (KRT8P7-001) 119602875-119604306 processed_pseudogene
ENSG00000254406 (RP11-215D10.1)
 ENST00000527539 (RP11-215D10.1-001) 119821304-119822129 processed_pseudogene
ENSG00000254561 (RP11-196E1.3)
 ENST00000532153 (RP11-196E1.3-001) 119608423-119659284 antisense
ENSG00000254854 (CTD-2523D13.2)
 ENST00000533253 (CTD-2523D13.2-001) 119729583-119739623 antisense
ENSG00000254863 (RP11-831A10.2)
 ENST00000524708 (RP11-831A10.2-002) 119988764-119995037 lincRNA
ENST00000526934 (RP11-831A10.2-001) 119988665-119994709 lincRNA
ENST00000534055 (RP11-831A10.2-003) 119987954-119988834 lincRNA
ENSG00000255216 (RP11-831A10.1)
 ENST00000534423 (RP11-831A10.1-001) 120008604-120012158 lincRNA
ENSG00000255247 (CTD-2523D13.1)
 ENST00000529229 (CTD-2523D13.1-001) 119709920-119713925 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00099Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1915 VISTA 10090 9:43264181-43868174
GeneTranscriptPositionBiotype
ENSMUSG00000032012 (Pvrl1)
poliovirus receptor-related 1 		ENSMUST00000034510 (Pvrl1-201) 43744576-43807454 protein_coding
ENSMUSG00000032013 (Trim29)
tripartite motif-containing 29 		ENSMUST00000034511 (Trim29-201) 43310763-43336125 protein_coding
ENSMUSG00000095385 (D630033O11Rik)
RIKEN cDNA D630033O11 gene 		ENSMUST00000179013 (D630033O11Rik-201) 43259879-43280075 protein_coding
ENSMUSG00000096322 (Gm3898)
predicted gene 3898 		ENSMUST00000180221 (Gm3898-201) 43829963-43832516 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00099Y_0001ENSG00000110400ENST00000264025ENST00000340882ENST00000524510ENSG00000137699ENST00000341846ENST00000475051ENST00000524816ENST00000524956ENST00000529044ENST00000530470ENST00000532195ENST00000532833ENST00000533302ENSG00000176984ENST00000319763ENST00000530303ENSG00000199217ENST00000362347ENSG00000230716ENST00000533003ENSG00000254406ENST00000527539ENSG00000254561ENST00000532153ENSG00000254854ENST00000533253ENSG00000254863ENST00000524708ENST00000534055ENSG00000255216ENST00000534423ENSG00000255247ENST00000529229CIL_00099Y_0002ENSMUSG00000032012ENSMUST00000034510ENSMUSG00000032013ENSMUST00000034511ENSMUSG00000095385ENSMUST00000179013ENSMUSG00000096322ENSMUST00000180221
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110400 ENST00000264025 0.550±0.00 1.563±0.00 0.424±0.00 9.529±8.20 3.137±1.96 0.808±0.33 2.357±2.11 1.623±1.50 0.964±0.47 1.497±1.42 N/A 4.342±1.91 4.165±0.47 1.241±0.00
ENST00000340882 N/A N/A N/A N/A N/A N/A N/A 1.190±0.00 1.761±0.00 N/A N/A 1.930±0.00 N/A N/A
ENST00000341398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524510 N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A N/A 1.300±0.00 N/A N/A N/A N/A
ENST00000531468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000137699 ENST00000341846 N/A 0.084±0.00 N/A N/A N/A N/A N/A 0.331±0.00 0.925±0.00 N/A N/A 0.484±0.00 N/A 0.540±0.00
ENST00000475051 1.372±0.00 N/A 0.030±0.00 0.093±0.07 7.252±0.00 0.241±0.00 N/A 0.348±0.00 0.021±0.00 4.208±4.02 N/A 2.893±0.00 N/A 2.261±0.99
ENST00000524664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524816 1.210±0.00 N/A N/A N/A 4.900±4.17 0.314±0.00 0.012±0.00 0.341±0.00 0.034±0.00 3.586±0.00 0.706±0.00 5.058±4.07 22.398±6.84 3.968±1.33
ENST00000524956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 222.417±0.00 105.995±0.00 17.543±0.00
ENST00000525327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529044 N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530470 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532195 N/A N/A N/A N/A 2.831±0.00 N/A 0.052±0.00 1.606±0.00 N/A N/A 0.171±0.00 N/A N/A N/A
ENST00000532833 N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A
ENST00000533302 N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A
ENSG00000176984 ENST00000319763 0.030±0.00 0.188±0.00 N/A 0.100±0.00 0.092±0.01 0.300±0.29 0.040±0.00 0.196±0.00 N/A 0.068±0.00 N/A 0.024±0.00 N/A 0.079±0.00
ENST00000530303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A
ENSG00000199217 ENST00000362347 N/A N/A N/A 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230716 ENST00000533003 N/A N/A N/A 0.072±0.00 0.018±0.00 0.016±0.00 N/A 0.034±0.00 0.030±0.00 N/A N/A 0.080±0.04 0.057±0.00 0.071±0.03
ENSG00000254406 ENST00000527539 0.036±0.00 N/A N/A 0.060±0.00 0.059±0.00 N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A 0.135±0.00
ENSG00000254561 ENST00000532153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00
ENSG00000254854 ENST00000533253 0.189±0.00 0.082±0.00 0.114±0.00 0.734±0.36 0.348±0.00 0.195±0.00 0.079±0.00 0.171±0.00 N/A 0.299±0.00 N/A 0.379±0.07 N/A 0.335±0.11
ENSG00000254863 ENST00000524708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.581±0.00
ENST00000526934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534055 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A 1.294±0.52
ENSG00000255216 ENST00000534423 N/A N/A N/A 0.113±0.00 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00
ENSG00000255247 ENST00000529229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.515±0.00 N/A 0.705±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032012 ENSMUST00000034510 3.575±0.24 7.236±1.15 10.224±2.69 8.903±3.29 6.006±1.63 5.153±0.17 0.936±0.19 10.568±0.70 9.696±8.15 10.319±0.76 0.256±0.06 11.229±3.51 2.244±0.74 0.829±0.29
ENSMUSG00000032013 ENSMUST00000034511 0.308±0.10 0.070±0.03 28.788±3.18 1.099±0.04 10.011±4.00 0.207±0.08 0.111±0.07 0.529±0.21 0.042±0.04 6.800±5.10 0.198±0.15 0.067±0.03 0.690±0.36 0.150±0.05
ENSMUSG00000095385 ENSMUST00000179013 1.840±0.93 0.136±0.00 0.859±0.22 0.159±0.02 1.503±0.72 1.755±0.00 0.730±0.47 0.452±0.13 0.798±0.37 0.169±0.00 0.239±0.06 0.844±0.38 0.385±0.19 0.108±0.05
ENSMUSG00000096322 ENSMUST00000180221 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.01 N/A N/A 0.028±0.00 0.270±0.00

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