C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle receptor ('docking protein')
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034541 Srpr-001 ENSMUSG00000032042 10090 + 9:35211155-35217014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034541 46.504±11.27 52.457±2.13 36.809±0.50 17.789±6.88 62.381±18.32 59.902±3.42 38.706±1.17 49.219±1.89 45.765±11.94 58.511±7.27 89.418±4.80 53.070±11.08 39.981±14.11 30.499±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0002 VISTA 9:35123876-35727017
CIL_0002HQ CIL_0002HQ_0002 CGP 9:35200175-35247973

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005047 IEA signal recognition particle binding
GO:0005525 IEA GTP binding
GO:0005785 IEA signal recognition particle receptor complex
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0016020 ISO membrane
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086823 srpr-001 protein_coding Danio_rerio 0 516
ENST00000332118 SRPR-001 protein_coding Homo_sapiens 0 3245
ENST00000527817 SRPR-004 retained_intron Homo_sapiens 0 725
ENST00000528744 SRPR-003 retained_intron Homo_sapiens 0 604
ENST00000530680 SRPR-008 processed_transcript Homo_sapiens 0 488
ENST00000531104 SRPR-005 retained_intron Homo_sapiens 0 398
ENST00000532259 SRPR-002 protein_coding Homo_sapiens 0 2599
ENST00000532268 SRPR-006 retained_intron Homo_sapiens 0 425
ENST00000533050 FAM118B-001 protein_coding Homo_sapiens 0.0000000000002 82

Loading