C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle receptor (docking protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532259 SRPR-002 ENSG00000182934 9606 - 11:126263474-126268982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonOvaryPlacentaENST00000532259
Transcript ID Adipose Breast Colon Ovary Placenta
ENST00000532259 22.804±0.00 12.672±0.00 10.742±0.00 29.985±0.00 17.734±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W7 CIL_0007W7_0001 VISTA 11:125757160-126360423
CIL_00050Z CIL_00050Z_0002 CGP 11:126211414-126269144
CIL_0002HQ CIL_0002HQ_0001 CGP 11:126262919-126278131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005047 IEA signal recognition particle binding
GO:0005525 IEA GTP binding
GO:0005783 TAS endoplasmic reticulum
GO:0005785 IEA signal recognition particle receptor complex
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006184 IEA GTP catabolic process
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034541 Srpr-001 protein_coding Mus_musculus 0 2599
ENSMUST00000118302 Gm6733-001 processed_pseudogene Mus_musculus 0 1626
ENSMUST00000138287 Srpr-004 processed_transcript Mus_musculus 0 830
ENSMUST00000132799 Srpr-003 protein_coding Mus_musculus 0 595
ENSMUST00000154005 Srpr-002 retained_intron Mus_musculus 0 433
ENSMUST00000187246 RP23-125I14.6-001 processed_pseudogene Mus_musculus 0 418

Loading