C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: crystallin, alpha B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034562 Cryab-201 ENSMUSG00000032060 10090 + 9:50752758-50756633 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034562 58.384±31.40 20.682±2.68 32.129±14.19 5.434±5.77 45.706±9.05 23.551±6.14 609.615±199.95 125.861±32.72 1.602±0.51 76.251±26.23 132.518±73.27 23.118±10.04 30.848±32.78 1.034±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WD CIL_0003WD_0002 CGP 9:50751072-50756633
CIL_0002TF CIL_0002TF_0002 CGP 9:50752758-50775520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IMP response to hypoxia
GO:0002088 IGI lens development in camera-type eye
GO:0005212 TAS structural constituent of eye lens
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005794 IEA Golgi apparatus
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006457 IEA protein folding
GO:0007021 IMP tubulin complex assembly
GO:0007517 IGI muscle organ development
GO:0007568 IEA aging
GO:0008017 IEA microtubule binding
GO:0008092 IEA cytoskeletal protein binding
GO:0009986 IEA cell surface
GO:0010629 IMP negative regulation of gene expression
GO:0010941 ISO regulation of cell death
GO:0015630 IEA microtubule cytoskeleton
GO:0030018 IDA Z disc
GO:0030308 IEA negative regulation of cell growth
GO:0031109 IEA microtubule polymerization or depolymerization
GO:0031674 IEA I band
GO:0032355 IEA response to estradiol
GO:0032387 IEA negative regulation of intracellular transport
GO:0032432 IEA actin filament bundle
GO:0042542 IMP response to hydrogen peroxide
GO:0042802 IEA identical protein binding
GO:0042803 ISS protein homodimerization activity
GO:0043010 IGI camera-type eye development
GO:0043066 IMP negative regulation of apoptotic process
GO:0043154 IGI negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043292 IDA contractile fiber
GO:0046872 IEA metal ion binding
GO:0051082 IEA unfolded protein binding
GO:0051260 IEA protein homooligomerization
GO:0051403 IEA stress-activated MAPK cascade
GO:0060561 IGI apoptotic process involved in morphogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:0071480 ISO cellular response to gamma radiation
GO:2000378 IEA negative regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227251 CRYAB-003 protein_coding Homo_sapiens 0 963
ENST00000524660 CRYAB-012 protein_coding Homo_sapiens 0 468
ENST00000525823 CRYAB-008 protein_coding Homo_sapiens 0 592
ENST00000526167 CRYAB-010 protein_coding Homo_sapiens 0 429
ENST00000526180 CRYAB-001 protein_coding Homo_sapiens 0 1232
ENST00000527899 CRYAB-005 protein_coding Homo_sapiens 0 966
ENST00000527950 CRYAB-013 protein_coding Homo_sapiens 0 1120
ENST00000528628 CRYAB-007 protein_coding Homo_sapiens 0 571
ENST00000528961 CRYAB-009 protein_coding Homo_sapiens 0 433
ENST00000529647 CRYAB-014 protein_coding Homo_sapiens 0 739
ENST00000531198 CRYAB-015 protein_coding Homo_sapiens 0 1086
ENST00000533280 CRYAB-011 protein_coding Homo_sapiens 0 588
ENST00000533475 CRYAB-002 protein_coding Homo_sapiens 0 1120
ENST00000533879 CRYAB-006 protein_coding Homo_sapiens 0 544
ENST00000533971 CRYAB-004 protein_coding Homo_sapiens 0 503
ENST00000616970 CRYAB-201 protein_coding Homo_sapiens 0 1123

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