C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034623 Trappc4-201 ENSMUSG00000032112 10090 - 9:44403761-44407548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034623
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034623 26.270±3.13 33.769±3.49 23.830±4.55 43.859±14.46 25.855±2.84 19.892±1.38 14.192±0.52 23.611±2.58 14.779±4.62 17.738±2.89 6.073±0.84 21.321±3.07 26.959±3.40 23.426±6.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ME CIL_0003ME_0002 CGP 9:44398176-44407548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005795 IDA Golgi stack
GO:0005801 IEA cis-Golgi network
GO:0005886 TAS plasma membrane
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008021 IDA synaptic vesicle
GO:0016192 TAS vesicle-mediated transport
GO:0016358 IDA dendrite development
GO:0030008 IDA TRAPP complex
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0045202 IDA synapse
GO:0045211 IEA postsynaptic membrane
GO:0045212 TAS neurotransmitter receptor biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359005 TRAPPC4-005 protein_coding Homo_sapiens 0 599
ENST00000434101 TRAPPC4-002 protein_coding Homo_sapiens 0 405
ENST00000447216 TRAPPC4-003 retained_intron Homo_sapiens 0 601
ENST00000524797 TRAPPC4-013 retained_intron Homo_sapiens 0 342
ENST00000525079 TRAPPC4-011 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000525303 TRAPPC4-010 protein_coding Homo_sapiens 0 340
ENST00000526141 TRAPPC4-014 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000527680 TRAPPC4-008 retained_intron Homo_sapiens 0 470
ENST00000528230 TRAPPC4-009 protein_coding Homo_sapiens 0 453
ENST00000531290 TRAPPC4-007 retained_intron Homo_sapiens 0 721
ENST00000533012 TRAPPC4-006 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000533058 TRAPPC4-004 protein_coding Homo_sapiens 0 797
ENST00000533149 TRAPPC4-012 retained_intron Homo_sapiens 0 468
ENST00000533632 TRAPPC4-001 protein_coding Homo_sapiens 0 935

Loading