C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase bubblegum family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034822 Acsbg1-001 ENSMUSG00000032281 10090 - 9:54604877-54661870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034822
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034822 0.199±0.06 83.345±41.28 2.130±0.43 14.675±15.00 3.223±0.33 0.423±0.12 0.310±0.07 0.520±0.11 0.053±0.02 0.346±0.12 0.113±0.10 168.288±82.73 0.894±0.78 25.957±11.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YR CIL_0007YR_0002 VISTA 9:54035032-54637557
CIL_0003NR CIL_0003NR_0003 CGP 9:54586511-54661870
CIL_0003TL CIL_0003TL_0002 CGP 9:54604877-54716315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 ISS very long-chain fatty acid metabolic process
GO:0001552 IEA ovarian follicle atresia
GO:0001676 ISS long-chain fatty acid metabolic process
GO:0004467 ISS long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0031410 IEA cytoplasmic vesicle
GO:0031957 ISS very long-chain fatty acid-CoA ligase activity
GO:0051384 IMP response to glucocorticoid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258873 ACSBG1-001 protein_coding Homo_sapiens 0 2287
ENST00000557935 ACSBG1-012 nonsense_mediated_decay Homo_sapiens 0 536
ENST00000558728 ACSBG1-006 retained_intron Homo_sapiens 0 763
ENST00000559114 ACSBG1-013 protein_coding Homo_sapiens 0 523
ENST00000559241 ACSBG1-007 protein_coding Homo_sapiens 0 518
ENST00000559707 ACSBG1-002 nonsense_mediated_decay Homo_sapiens 0 1408
ENST00000560124 ACSBG1-003 nonsense_mediated_decay Homo_sapiens 0 1718
ENST00000560183 ACSBG1-004 retained_intron Homo_sapiens 0 405
ENST00000560817 ACSBG1-010 protein_coding Homo_sapiens 0 1718

Loading