C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear RNA activating complex, polypeptide 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034965 Snapc5-201 ENSMUSG00000032398 10090 + 9:64179297-64182684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034965 22.100±6.48 6.521±1.65 28.013±10.99 10.661±1.84 12.033±2.45 14.607±1.71 13.058±2.21 24.074±2.99 15.814±4.88 16.970±1.28 17.055±0.94 16.139±5.18 12.332±2.35 14.888±3.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R9 CIL_0008R9_0002 VISTA 9:63580198-64181507
CIL_0008Q7 CIL_0008Q7_0002 VISTA 9:63744784-64346949

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006384 IEA transcription initiation from RNA polymerase III promoter
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316634 SNAPC5-001 protein_coding Homo_sapiens 0 209
ENST00000395589 SNAPC5-008 protein_coding Homo_sapiens 0 209
ENST00000562411 SNAPC5-007 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000563480 SNAPC5-006 protein_coding Homo_sapiens 0 209
ENST00000568875 SNAPC5-002 nonsense_mediated_decay Homo_sapiens 1e-34 152

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