C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 4 (proto-oncogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035237 Usp4-201 ENSMUSG00000032612 10090 + 9:108347831-108392529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035237
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035237 23.912±2.69 18.135±0.80 19.355±0.13 22.869±4.21 19.084±2.12 20.092±3.11 15.941±0.70 21.840±0.61 21.059±3.95 22.919±2.49 16.228±4.71 22.523±4.09 25.364±2.77 41.866±10.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 ISS protein deubiquitination
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0031647 ISS regulation of protein stability
GO:0031685 IEA adenosine receptor binding
GO:0034394 ISS protein localization to cell surface
GO:0042802 IEA identical protein binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265560 USP4-002 protein_coding Homo_sapiens 0 3500
ENST00000351842 USP4-001 protein_coding Homo_sapiens 0 2372
ENST00000415188 USP4-011 protein_coding Homo_sapiens 0 924
ENST00000416417 USP4-005 protein_coding Homo_sapiens 0 926
ENST00000431357 USP4-004 protein_coding Homo_sapiens 0 1550
ENST00000461553 USP4-009 processed_transcript Homo_sapiens 0 518
ENST00000464168 USP4-013 processed_transcript Homo_sapiens 0 630
ENST00000485450 USP4-003 retained_intron Homo_sapiens 0 2525
ENST00000486549 USP4-010 processed_transcript Homo_sapiens 0 392
ENST00000488520 USP4-008 processed_transcript Homo_sapiens 0 896
ENST00000491791 USP4-014 processed_transcript Homo_sapiens 0 806

Loading