C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic vesicle glycoprotein 2 a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035371 Sv2a-001 ENSMUSG00000038486 10090 + 3:96181151-96195521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035371 1.439±1.22 1.047±0.50 1.098±0.08 47.821±27.50 0.541±0.20 0.738±0.22 1.260±0.37 7.986±2.42 0.106±0.11 0.531±0.10 0.115±0.02 0.846±0.36 0.113±0.08 0.192±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V2 CIL_0005V2_0002 CGP 3:96181151-96219709

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IDA receptor activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005911 IDA cell-cell junction
GO:0006836 IEA neurotransmitter transport
GO:0006874 IDA cellular calcium ion homeostasis
GO:0007268 TAS synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0019901 IPI protein kinase binding
GO:0022857 IEA transmembrane transporter activity
GO:0030672 IEA synaptic vesicle membrane
GO:0031594 IDA neuromuscular junction
GO:0043005 IDA neuron projection
GO:0045202 ISO synapse
GO:0048786 IDA presynaptic active zone
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124676 sv2ba-202 protein_coding Danio_rerio 0 254
ENSDART00000080106 sv2ba-201 protein_coding Danio_rerio 0 254
ENST00000330276 SV2B-201 protein_coding Homo_sapiens 0 388
ENST00000369145 SV2A-002 protein_coding Homo_sapiens 0 2857
ENST00000369146 SV2A-001 protein_coding Homo_sapiens 0 3474
ENST00000394232 SV2B-001 protein_coding Homo_sapiens 0 388
ENST00000557410 SV2B-003 nonsense_mediated_decay Homo_sapiens 0 388

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