C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic vesicle glycoprotein 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557410 SV2B-003 ENSG00000185518 9606 + 15:91100315-91295285 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000557410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000557410 3.271±0.00 1.468±0.00 0.031±0.00 12.791±0.48 0.715±0.32 0.541±0.39 0.680±0.27 0.056±0.00 0.216±0.14 0.230±0.16 0.039±0.03 0.216±0.17 0.508±0.14 0.542±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0006810 IEA transport
GO:0006836 IEA neurotransmitter transport
GO:0008021 ISS synaptic vesicle
GO:0016020 ISS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0030054 IEA cell junction
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085164 Sv2b-201 protein_coding Mus_musculus 0 2915
ENSMUST00000165175 Sv2b-202 protein_coding Mus_musculus 0 2915
ENSMUST00000035371 Sv2a-001 protein_coding Mus_musculus 0 388

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