C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating signal cointegrator 1 complex subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035606 Ascc3-201 ENSMUSG00000038774 10090 + 10:50592669-50851202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035606 3.876±1.27 2.720±0.60 3.761±0.34 2.579±0.73 2.345±0.93 2.853±0.67 1.180±0.38 1.809±0.63 3.022±1.11 3.453±0.93 1.390±0.11 4.471±1.19 5.815±0.52 3.616±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V6 CIL_0008V6_0002 VISTA 10:50533719-51134473

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006307 ISS DNA dealkylation involved in DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008283 ISS cell proliferation
GO:0016020 IEA membrane
GO:0032508 ISS DNA duplex unwinding
GO:0043140 ISS ATP-dependent 3'-5' DNA helicase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324696 ASCC3-003 nonsense_mediated_decay Homo_sapiens 0 3829
ENST00000324723 ASCC3-006 protein_coding Homo_sapiens 0 684
ENST00000369143 ASCC3-002 protein_coding Homo_sapiens 0 351
ENST00000369162 ASCC3-001 protein_coding Homo_sapiens 0 8165
ENST00000468245 ASCC3-005 retained_intron Homo_sapiens 0 979
ENST00000518006 ASCC3-007 retained_intron Homo_sapiens 0 309
ENST00000522650 ASCC3-004 protein_coding Homo_sapiens 0 2571

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