C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate proteoglycan 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035661 Cspg4-201 ENSMUSG00000032911 10090 + 9:56865104-56899870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035661 10.737±0.30 4.073±1.10 8.753±1.02 1.428±0.33 7.589±3.94 3.404±1.80 3.493±0.30 4.273±0.86 0.046±0.03 5.461±0.19 0.974±0.29 4.453±1.87 0.693±0.59 0.139±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IMP activation of MAPK activity
GO:0001525 IEA angiogenesis
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007169 IMP transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008283 IMP cell proliferation
GO:0008347 IDA glial cell migration
GO:0016021 IEA integral component of membrane
GO:0019901 IEA protein kinase binding
GO:0035556 IEA intracellular signal transduction
GO:0042995 IEA cell projection
GO:0048771 IEA tissue remodeling
GO:0050731 IEA positive regulation of peptidyl-tyrosine phosphorylation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308508 CSPG4-001 protein_coding Homo_sapiens 0 6383
ENST00000333235 CSPG4P4Y-001 unprocessed_pseudogene Homo_sapiens 0 1986
ENST00000418188 CSPG4P3Y-001 unprocessed_pseudogene Homo_sapiens 0 1980
ENST00000456932 CSPG4P8-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 3086
ENST00000558282 CSPG4P12-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 3088
ENST00000558731 CSPG4P5-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 2209
ENST00000558801 DNM1P51-001 processed_transcript Homo_sapiens 0 2207
ENST00000560634 CSPG4P11-001 unprocessed_pseudogene Homo_sapiens 0 3140
ENST00000565545 CSPG4P13-002 processed_transcript Homo_sapiens 0 473
ENST00000567704 CSPG4P13-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 3336

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