C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate proteoglycan 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308508 CSPG4-001 ENSG00000173546 9606 - 15:75674322-75712848 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308508 16.427±0.00 2.750±0.00 0.228±0.00 2.405±2.07 17.386±0.00 10.896±9.34 2.336±1.89 5.003±0.00 3.569±3.44 7.588±6.67 15.663±13.73 3.542±1.06 16.193±5.25 3.995±3.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AG CIL_0000AG_0002 CGP 15:75647906-75712848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IEA activation of MAPK activity
GO:0001525 IEA angiogenesis
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005796 TAS Golgi lumen
GO:0005886 IEA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005925 IDA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0007169 IEA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008283 IEA cell proliferation
GO:0008347 IEA glial cell migration
GO:0009986 TAS cell surface
GO:0019901 IPI protein kinase binding
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0035556 IDA intracellular signal transduction
GO:0042995 IEA cell projection
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0048771 IEA tissue remodeling
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035661 Cspg4-201 protein_coding Mus_musculus 0 6383

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