C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035775 Lsm7-201 ENSMUSG00000035215 10090 - 10:80852825-80855209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035775 30.340±9.22 33.336±1.98 48.632±2.00 75.627±51.20 27.017±9.54 32.111±4.27 22.924±5.32 27.022±3.32 76.023±80.42 27.215±0.58 9.937±1.58 42.790±14.47 29.188±22.49 17.108±8.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SY CIL_0001SY_0002 CGP 10:80832807-80855209
CIL_0001IB CIL_0001IB_0002 CGP 10:80852825-80868705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252622 LSM7-001 protein_coding Homo_sapiens 0 372
ENST00000585395 LSM7-003 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000585409 LSM7-007 protein_coding Homo_sapiens 0 346
ENST00000587502 LSM7-002 protein_coding Homo_sapiens 0 348
ENST00000589532 LSM7-004 processed_transcript Homo_sapiens 0 259
ENST00000591515 LSM7-005 retained_intron Homo_sapiens 0 261

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