C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biogenesis of lysosomal organelles complex-1, subunit 5, muted
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035899 Bloc1s5-201 ENSMUSG00000038982 10090 - 13:38602709-38635109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035899 14.145±2.51 16.911±0.68 10.472±0.65 8.461±2.35 11.402±0.99 7.680±0.46 8.755±0.47 13.333±0.99 12.884±3.12 9.989±1.19 4.160±0.27 10.834±2.55 8.432±0.58 7.680±2.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015W CIL_00015W_0003 CGP 13:38500273-38635109
CIL_00015V CIL_00015V_0003 CGP 13:38602709-38659028

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008089 IMP anterograde axon cargo transport
GO:0016192 IMP vesicle-mediated transport
GO:0030133 ISS transport vesicle
GO:0031083 ISS BLOC-1 complex
GO:0031175 NAS neuron projection development
GO:0032402 ISS melanosome transport
GO:0032474 IMP otolith morphogenesis
GO:0035646 ISS endosome to melanosome transport
GO:0048066 IMP developmental pigmentation
GO:0048490 IMP anterograde synaptic vesicle transport
GO:0050942 ISS positive regulation of pigment cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244777 BLOC1S5-003 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000397456 EEF1E1-BLOC1S5-001 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000397457 BLOC1S5-001 protein_coding Homo_sapiens 0 470
ENST00000439343 BLOC1S5-TXNDC5-001 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000543936 BLOC1S5-201 protein_coding Homo_sapiens 0 243

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