C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00015W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000009342-ENSDARG00000058622 CGP 7955 24:8054762-8109498
GeneTranscriptPositionBiotype
ENSDARG00000009342 (txndc5)
thioredoxin domain containing 5
ENSDART00000145815 (txndc5-001) 8054762-8070970 protein_coding
ENSDARG00000058622 (bloc1s5)
biogenesis of lysosomal organelles complex-1, subunit 5, muted
ENSDART00000081515 (bloc1s5-201) 8105504-8109498 protein_coding
CIL_00015W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000239264-ENSG00000188428 CGP 9606 6:7881517-8064414
GeneTranscriptPositionBiotype
ENSG00000217746 (RP1-303A1.1)
ENST00000405326 (RP1-303A1.1-001) 7938430-7939322 processed_pseudogene
ENSG00000219294 (PIP5K1P1)
phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1
ENST00000460661 (PIP5K1P1-001) 7986537-7988192 processed_pseudogene
ENSG00000239264 (TXNDC5)
thioredoxin domain containing 5 (endoplasmic reticulum)
ENST00000379757 (TXNDC5-001) 7881517-7910814 protein_coding
ENST00000460138 (TXNDC5-002) 7881517-7889445 retained_intron
ENST00000469459 (TXNDC5-004) 7895155-7900242 retained_intron
ENST00000473453 (TXNDC5-003) 7883144-7910077 protein_coding
ENST00000475802 (TXNDC5-005) 7883155-7888961 retained_intron
ENSG00000259040 (BLOC1S5-TXNDC5)
BLOC1S5-TXNDC5 readthrough (NMD candidate)
ENST00000439343 (BLOC1S5-TXNDC5-001) 7881522-8064364 nonsense_mediated_decay
ENST00000539054 (BLOC1S5-TXNDC5-201) 7881250-8026413 protein_coding
CIL_00015W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038991-ENSMUSG00000038982 CGP 10090 13:38500273-38635109
GeneTranscriptPositionBiotype
ENSMUSG00000038982 (Bloc1s5)
biogenesis of lysosomal organelles complex-1, subunit 5, muted
ENSMUST00000035899 (Bloc1s5-201) 38602709-38635109 protein_coding
ENSMUSG00000038991 (Txndc5)
thioredoxin domain containing 5
ENSMUST00000035988 (Txndc5-001) 38500273-38528490 protein_coding
ENSMUST00000160046 (Txndc5-004) 38500277-38505942 retained_intron
ENSMUST00000160653 (Txndc5-003) 38500273-38527914 protein_coding
ENSMUST00000162075 (Txndc5-002) 38500273-38528824 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00015W_0001ENSDARG00000009342ENSDART00000145815ENSDARG00000058622ENSDART00000081515CIL_00015W_0002ENSG00000217746ENST00000405326ENSG00000219294ENST00000460661ENSG00000239264ENST00000379757ENST00000460138ENST00000469459ENST00000473453ENST00000475802ENSG00000259040ENST00000439343ENST00000539054CIL_00015W_0003ENSMUSG00000038982ENSMUST00000035899ENSMUSG00000038991ENSMUST00000035988ENSMUST00000160046ENSMUST00000160653ENSMUST00000162075
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00015W_0001ENSDARG00000009342ENSDART00000145815ENSDARG00000058622ENSDART00000081515CIL_00015W_0002ENSG00000217746ENST00000405326ENSG00000219294ENST00000460661ENSG00000239264ENST00000379757ENST00000473453ENSG00000259040ENST00000439343ENST00000539054CIL_00015W_0003ENSMUSG00000038982ENSMUST00000035899ENSMUSG00000038991ENSMUST00000035988ENSMUST00000160653
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000009342 ENSDART00000145815 N/A N/A N/A 6.856±1.08 N/A N/A 12.491±2.75 25.147±5.92 0.976±0.00 N/A 2.801±0.00 N/A N/A N/A
ENSDARG00000058622 ENSDART00000081515 N/A N/A N/A 9.598±1.88 N/A N/A 3.957±2.28 2.248±0.99 0.449±0.00 N/A 1.897±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000217746 ENST00000405326 N/A 0.029±0.00 N/A 0.030±0.00 0.015±0.00 N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000219294 ENST00000460661 N/A 0.049±0.00 0.466±0.00 0.056±0.00 N/A N/A N/A N/A N/A 0.211±0.00 N/A 0.046±0.02 N/A 1.833±0.00
ENSG00000239264 ENST00000379757 45.619±0.00 174.138±0.00 5.603±0.00 12.222±0.00 60.889±10.43 45.169±0.03 12.500±7.60 40.277±19.56 52.243±39.73 42.713±22.36 4.033±1.07 74.273±33.53 100.669±8.45 26.702±15.65
ENST00000460138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 58.687±0.00 71.186±0.00 15.040±0.00
ENST00000475802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259040 ENST00000439343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.734±0.00 N/A N/A N/A
ENST00000539054 16.834±0.00 N/A 3.465±0.00 5.057±0.00 9.499±0.00 N/A N/A 4.511±0.00 3.238±0.00 8.078±0.00 0.835±0.00 14.697±3.82 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038982 ENSMUST00000035899 14.145±2.51 16.911±0.68 10.472±0.65 8.461±2.35 11.402±0.99 7.680±0.46 8.755±0.47 13.333±0.99 12.884±3.12 9.989±1.19 4.160±0.27 10.834±2.55 8.432±0.58 7.680±2.22
ENSMUSG00000038991 ENSMUST00000035988 72.549±37.87 219.865±13.62 62.881±4.96 17.629±3.44 82.656±41.27 222.259±18.38 18.365±2.68 47.815±11.74 49.691±10.73 93.957±15.18 10.280±1.23 159.941±56.39 78.598±19.61 8.118±2.12
ENSMUST00000160046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.633±15.46 N/A N/A
ENSMUST00000162075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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